YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MBOA2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.51
Transmembrane Helix	17	39	0.86
Cytoplasmic	40	46	0.54
Transmembrane Helix	47	71	0.80
Non-Cytoplasmic	72	84	0.47
Transmembrane Helix	85	107	0.87
Cytoplasmic	108	208	0.68
Transmembrane Helix	209	229	0.87
Non-Cytoplasmic	230	264	0.59
Transmembrane Helix	265	287	0.87
Cytoplasmic	288	303	0.55
Transmembrane Helix	304	319	0.38
Non-Cytoplasmic	320	355	0.72
Transmembrane Helix	356	378	0.75
Cytoplasmic	379	398	0.78
Transmembrane Helix	399	417	0.90
Non-Cytoplasmic	418	432	0.74
Transmembrane Helix	433	454	0.92
Cytoplasmic	455	465	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLDMNSMA ASIGVSVAVL RFLLCFVATI PISFLWRFIP SRLGKHIYSA ASGAFLSYLS  60
   61 FGFSSNLHFL VPMTIGYASM AIYRPLSGFI TFFLGFAYLI GCHVFYMSGD AWKEGGIDST 120
  121 GALMVLTLKV ISCSINYNDG MLKEEGLREA QKKNRLIQMP SLIEYFGYCL CCGSHFAGPV 180
  181 FEMKDYLEWT EEKGIWAVSE KGKRPSPYGA MIRAVFQAAI CMALYLYLVP QFPLTRFTEP 240
  241 VYQEWGFLKR FGYQYMAGFT ARWKYYFIWS ISEASIIISG LGFSGWTDET QTKAKWDRAK 300
  301 NVDILGVELA KSAVQIPLFW NIQVSTWLRH YVYERIVKPG KKAGFFQLLA TQTVSAVWHG 360
  361 LYPGYIIFFV QSALMIDGSK AIYRWQQAIP PKMAMLRNVL VLINFLYTVV VLNYSSVGFM 420
  421 VLSLHETLVA FKSVYYIGTV IPIAVLLLSY LVPVKPVRPK TRKEE