YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALMT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVREIVRE GIRVGNEDPR RIIHAFKVGL ALVLVSSFYY YQPFGPFTDY FGINAMWAVM  60
   61 TVVVVFEFSV GATLGKGLNR GVATLVAGGL GIGAHQLARL SGATVEPILL VMLVFVQAAL 120
  121 STFVRFFPWV KTKFDYGILI FILTFALISL SGFRDEEIMD LAESRLSTVV IGGVSCILIS 180
  181 IFVCPVWAGQ DLHSLLASNF DTLSHFLQDF GDEYFEAREK GDYKVVEKRK KNLERYKSVL 240
  241 DSKSDEEALA NYAEWEPPHG QFRFRHPWKQ YVAVGALLRQ CAYRIDALNS YINSDFQIPV 300
  301 DIKKKLETPL RRMSSESGNS MKEMSISLKQ MIKSSSSDIH VSNSQAACKS LSTLLKSGIL 360
  361 NDVEPLQMIS LMTTVSMLID IVNLTEKISE SVHELASAAR FKNKMRPTVL YEKSDSGSIG 420
  421 RAMPIDSHED HHVVTVLHDV DNDRSNNVDD SRGGSSQDSC HHVAIKIVDD NSNHEKHEDG 480
  481 EIHVHTLSNG HLQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	41	0.93
Non-Cytoplasmic	42	52	0.77
Transmembrane Helix	53	74	0.85
Cytoplasmic	75	102	0.51
Transmembrane Helix	103	127	0.75
Non-Cytoplasmic	128	133	0.52
Transmembrane Helix	134	153	0.90
Cytoplasmic	154	165	0.58
Transmembrane Helix	166	189	0.90
Non-Cytoplasmic	190	493	0.65