YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6899885, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV  60
   61 IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA YTLWTGYLGW QWRRVRTIQS 120
  121 EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV 180
  181 LLGFGVLEAV FGGVNTYLRT GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH 240
  241 IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP

Type	Start	End	Confidence
Cytoplasmic	1	47	0.88
Transmembrane Helix	48	67	0.76
Non-Cytoplasmic	68	87	0.85
Transmembrane Helix	88	108	0.95
Cytoplasmic	109	176	0.95
Transmembrane Helix	177	198	0.85
Non-Cytoplasmic	199	207	0.80
Transmembrane Helix	208	229	0.92
Cytoplasmic	230	238	0.83
Transmembrane Helix	239	257	0.84
Non-Cytoplasmic	258	272	0.73