YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PDI53_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSTKLKSV DFYRKIPRDL TEASLSGAGL SIVAALFMMF LFGMELSSYL EVNTTTAVIV  60
   61 DKSSDGDFLR IDFNISFPAL SCEFASVDVS DVLGTNRLNI TKTVRKFPID PHLRSTGAEF 120
  121 HSGLALHNIN HGEETKEEFP DGAIPLTSAS FEALSHHFPI LVVNFNAPWC YWSNRLKPSW 180
  181 EKAANIIKQR YDPEADGRVL LGNVDCTEEP ALCKRNHIQG YPSIRIFRKG SDLREDHGHH 240
  241 EHESYYGDRD TDSIVKMVEG LVAPIHPETH KVALDGKSND TVKHLKKGPV TGGCRVEGYV 300
  301 RVKKVPGNLV ISAHSGAHSF DSSQMNMSHV VSHFSFGRMI SPRLLTDMKR LLPYLGLSHD 360
  361 RLDGKAFINQ HEFGANVTIE HYLQTVKTEV ITRRSGQEHS LIEEYEYTAH SSVAQTYYLP 420
  421 VAKFHFELSP MQILITENPK SFSHFITNLC AIIGGVFTVA GILDSIFHNT VRLVKKVELG 480
  481 KNI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	44	0.89
Non-Cytoplasmic	45	443	0.95
Transmembrane Helix	444	467	0.80
Cytoplasmic	468	483	0.80