YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149044608, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAETLTVF LKLLAAGFYG VSSFLIVVVN KSVLTNYRFP SSLCVGLGQM VATVAVLWVG  60
   61 KALRVVKFPD FDRNVPRKTF PLPLLYFGNQ ITGLFSTKKL NLPMFTVLRR FSILFTMFAE 120
  121 GALLKKTFSW GIKMTVFAMI IGAFIAASSD LAFDLEGYVF ILINDVLTAA NGAYVKQKLD 180
  181 SKELGKYGLL YYNALFMILP TLAIAYFTGD AQKAMEFEGW ADALFLLQFT LSCVMGFILM 240
  241 YATVLCTQYN SALTTTIVGC IKNILITYIG MVFGGDYIFT WTNFIGLNIS IAGSLVYSYI 300
  301 TFTEEQLSKQ SETSNKLDTK GKGAV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	29	0.94
Non-Cytoplasmic	30	38	0.69
Transmembrane Helix	39	60	0.88
Cytoplasmic	61	129	0.70
Transmembrane Helix	130	149	0.89
Non-Cytoplasmic	150	156	0.66
Transmembrane Helix	157	175	0.76
Cytoplasmic	176	187	0.79
Transmembrane Helix	188	208	0.93
Non-Cytoplasmic	209	223	0.78
Transmembrane Helix	224	245	0.92
Cytoplasmic	246	251	0.74
Transmembrane Helix	252	272	0.84
Non-Cytoplasmic	273	278	0.62
Transmembrane Helix	279	301	0.84
Cytoplasmic	302	325	0.83