YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10178207
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSLRSGGY RSLLIPIAVY PLLSKLIFAQ INIFRDRLIM LLPDKPRSDI FCYVLSRLQT  60
   61 LCGFLNLHGR LHVRENPPVM LRHYTLLVQT LVLASFDMLW NVLLCLKDSG LMLLNLLCET 120
  121 FYGGLGSLSK DHPSPCSVNV FNVFKASTST TFSCCYGLPM LIFSTTTFVA NKSKQQSTFP 180
  181 TPRTSTKALL YVAFLVSARI VSLTSSSTPS RLLTLAICSS FDSLLEESSI NFDLTSTTKL 240
  241 LCFWLQALKK SLSISSIYLS NLVMLILDYG PYCYVLNFGI ASLYLCSYLL H

Type	Start	End	Confidence
Cytoplasmic	1	11	0.48
Transmembrane Helix	12	33	0.72
Non-Cytoplasmic	34	49	0.53
Transmembrane Helix	50	69	0.37
Cytoplasmic	70	82	0.41
Transmembrane Helix	83	104	0.70
Non-Cytoplasmic	105	147	0.58
Transmembrane Helix	148	169	0.66
Cytoplasmic	170	187	0.70
Transmembrane Helix	188	203	0.64
Non-Cytoplasmic	204	268	0.61
Transmembrane Helix	269	288	0.53
Cytoplasmic	289	291	0.37