YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149043555, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGENDPPAAE APFSFRSLFG LDDLKISSVA PDGDAVAAQI LSLLPLKFFP IIVIGIIALI  60
   61 LALAIGLGIH FDCSGKYRCH SSFKCIELTA RCDGVPNCKD GEDEYRCVRV SGQRAALQVF 120
  121 TAAAWRTMCS DDWKSHYAKI ACAQLGFPSY VSSDHLRVDA LEEQFQGDFV SINHLLPDDK 180
  181 VTALHHSVYM REGCTSGHVV TLKCSACGMR TGYSPRIVGG NVSSLTQWPW QVSLQFQGYH 240
  241 LCGGSVITPL WIVTAAHCVY DLYHPKSWTV QVGLVSLMDS PVPSHLVEKI IYHSKYKPKR 300
  301 LGNDIALMKL SEPLTFDETI QPICLPNSEE NFPDGKLCWT SGWGATEDGG DASPVLNHAA 360
  361 VPLISNKICN HRDVYGGIIS PSMLCAGYLK GGVDSCQGDS GGPLVCQERR LWKLVGATSF 420
  421 GIGCAEVNKP GVYTRITSFL DWIHEQLERD LKT

Type	Start	End	Confidence
Cytoplasmic	1	47	0.78
Transmembrane Helix	48	71	0.90
Non-Cytoplasmic	72	453	0.79