YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RBL3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM  60
   61 FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS FEPLRTNPLF GPSSHTLEKL 120
  121 GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS 180
  181 GIGGSVLSSL FIRNSISVGA SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL 240
  241 AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL 300
  301 LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV

Type	Start	End	Confidence
Cytoplasmic	1	52	0.90
Transmembrane Helix	53	75	0.88
Non-Cytoplasmic	76	140	0.89
Transmembrane Helix	141	162	0.90
Cytoplasmic	163	169	0.76
Transmembrane Helix	170	192	0.87
Non-Cytoplasmic	193	197	0.72
Transmembrane Helix	198	217	0.90
Cytoplasmic	218	225	0.72
Transmembrane Helix	226	245	0.94
Non-Cytoplasmic	246	251	0.73
Transmembrane Helix	252	273	0.89
Cytoplasmic	274	295	0.89
Transmembrane Helix	296	317	0.94
Non-Cytoplasmic	318	346	0.94