YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149039838, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQYFHHNPV RVKSSSLFGT ASVALQRRDK QCQAFFRKVT KSTLFQILMI TTVTANSFLL  60
   61 VLGTNYDIHF RMFRVFEFLM KVYVDPITYW KDGYNILDVV ILVIITIPYF LRKIKGNHFE 120
  121 YLHFADGIQS LRVLKLISYS RGIRTLIIAV GETVYTVASV LTLLFLLMFV FAILGFCLFG 180
  181 NADRGDLTNW GNLAAAFFTL FSLATVDGWT NLQEELDKRK FTVSRAFTIL FILLASFIFL 240
  241 NMFVGVMIMH TEDSIKKFER EMTLERNLAL MEEKQMILRR QQDEVNRLMN TQAESRWQEL 300
  301 C

Type	Start	End	Confidence
Cytoplasmic	1	43	0.95
Transmembrane Helix	44	64	0.92
Non-Cytoplasmic	65	92	0.89
Transmembrane Helix	93	111	0.90
Cytoplasmic	112	152	0.83
Transmembrane Helix	153	178	0.84
Non-Cytoplasmic	179	189	0.71
Transmembrane Helix	190	211	0.87
Cytoplasmic	212	225	0.73
Transmembrane Helix	226	249	0.88
Non-Cytoplasmic	250	301	0.82