YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157817219, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLASLLLPW RWLAVAGEGP VLVMILLLSF MPNSPRFLLS KSRDEEALQA LIWLRADSEV  60
   61 HWEFEQIQDN VRRQSSRVSW AEAWEPRVYR PILITVLMRF LQQLTGITPI LVYLQTIFDS 120
  121 TSVVLPSQQD AAIVGAVRLL SVLIAAVTMD LAGRKVLLYV SASIMFVANL TLGLYVQLVP 180
  181 RTLTPNSTVE IVTLGGTEQP PAAAFNYLTL IPLLATMLFI MGYAMGWGPI TWLLMSEVLP 240
  241 LRARGVASGL CVLVSWLTAF VLTKYFLLAV NAFGLQVPFF FFSAICLLSL LFTGCCVPET 300
  301 RGRSLEQIEA FFHTRRMSFR P

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.78
Transmembrane Helix	12	31	0.92
Cytoplasmic	32	95	0.87
Transmembrane Helix	96	117	0.74
Non-Cytoplasmic	118	130	0.80
Transmembrane Helix	131	149	0.90
Cytoplasmic	150	155	0.82
Transmembrane Helix	156	178	0.90
Non-Cytoplasmic	179	207	0.92
Transmembrane Helix	208	231	0.84
Cytoplasmic	232	244	0.79
Transmembrane Helix	245	267	0.88
Non-Cytoplasmic	268	276	0.75
Transmembrane Helix	277	297	0.92
Cytoplasmic	298	321	0.95