YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9759194, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.99
Transmembrane Helix	42	61	0.96
Non-Cytoplasmic	62	68	0.78
Transmembrane Helix	69	89	0.92
Cytoplasmic	90	109	0.91
Transmembrane Helix	110	132	0.91
Non-Cytoplasmic	133	158	0.95
Transmembrane Helix	159	181	0.91
Cytoplasmic	182	219	0.92
Transmembrane Helix	220	240	0.86
Non-Cytoplasmic	241	269	0.81
Transmembrane Helix	270	294	0.85
Cytoplasmic	295	313	0.90
Transmembrane Helix	314	335	0.72
Non-Cytoplasmic	336	381	0.71
Transmembrane Helix	382	404	0.89
Cytoplasmic	405	408	0.68
Transmembrane Helix	409	432	0.86
Non-Cytoplasmic	433	452	0.64
Transmembrane Helix	453	474	0.73
Cytoplasmic	475	495	0.71
Transmembrane Helix	496	519	0.88
Non-Cytoplasmic	520	551	0.78
Transmembrane Helix	552	574	0.65
Cytoplasmic	575	590	0.48
Transmembrane Helix	591	616	0.81
Non-Cytoplasmic	617	625	0.55
Transmembrane Helix	626	654	0.72
Cytoplasmic	655	669	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSMMMEREG RNEIEREVID DLEETQNEGD DFKSIPPWKE QITFRGIVAS LIIGIIYSVI  60
   61 VMKLNLTTGL VPNLNVSAAL LAFVFLRSWT KLLTKAGIVT KPFTKQENTV VQTCAVACYS 120
  121 IAVGGGFGSY LLGLNRITYE QSGGTHTDGN YPEGTKEPGI GWMTAFLFFT CFVGLLALVP 180
  181 LRKIMIIDYK LTYPSGTATA VLINGFHTPK GNKMAKKQVF GFVKYFSFSF IWAFFQWFFS 240
  241 GGTECGFIQF PTFGLEALKN TMTYVGAGMI CPHIVNISLL FGAVLSWGIM WPLIKGLKGD 300
  301 WFPSTLPENS MKSLNGYKVF ISISLILGDG LYQFIKILFK TGINMYVKLN NRNSGKSNSE 360
  361 KDKQSIADLK RDEIFVRDSI PLWVAAVGYA AFSVVSIIAI PIMFPELKWY FIVVAYMLAP 420
  421 SLGFSNAYGA GLTDMNMAYN YGKVALFILA AMAGKQNGVV AGLVGCGLIK SIVSISSDLM 480
  481 HDFKTGHLTL TSPRSMLVSQ AIGTAIGCVV APLTFFLFYK AFDVGNQEGE YKAPYALVYR 540
  541 NMAILGVEGF SALPQHCLQL CYGFFAFAVA ANLVRDRLPD KIGNWVPLPM AMAVPFLVGG 600
  601 YFAIDMCVGS LIVFAWNMRD RVKAGLMVPA VASGLICGDG LWILPSSVLA LAGVRPPICM 660
  661 GFMPSKYSS