YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HPP5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDEAEIKEH LKPQASSETI DKKHNVKGKR LWQKVKYQLV EFHSLPAYLR DNEYIIGHYR  60
   61 SEWPIKQILL SIFTIHNETL NVWTHLIGFF LFLALTIYTA TKVPSVVDLH SLQHRLPDLL 120
  121 RKTDLHKLHS ELMSRLPSSP SSWHVMDLLY NCLPERFSHG NYTDMCVLHS VREDLANLIA 180
  181 PLIFRPITRW PFYAFLGGAI FCLLASSTCH LLSCHSERVS YIMLRLDYAG IAALIATSFY 240
  241 PPVYYSFMCD PFFCNLYLGF ITILGIATVL VSLLPVFQSL EFRVVRASLF FGMGFSGLAP 300
  301 ILHKLIIFWD QPEALHMTGY EILMGLLYGL GAVVYATRIP ERWMPGKFDI AGHSHQLFHV 360
  361 LVVAGALTHY RAGL

Type	Start	End	Confidence
Cytoplasmic	1	80	0.92
Transmembrane Helix	81	101	0.86
Non-Cytoplasmic	102	191	0.97
Transmembrane Helix	192	214	0.92
Cytoplasmic	215	223	0.86
Transmembrane Helix	224	244	0.89
Non-Cytoplasmic	245	255	0.80
Transmembrane Helix	256	277	0.93
Cytoplasmic	278	286	0.80
Transmembrane Helix	287	307	0.93
Non-Cytoplasmic	308	316	0.85
Transmembrane Helix	317	337	0.92
Cytoplasmic	338	354	0.83
Transmembrane Helix	355	372	0.68
Non-Cytoplasmic	373	374	0.59