YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAX2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.73
Transmembrane Helix	42	59	0.66
Non-Cytoplasmic	60	73	0.71
Transmembrane Helix	74	96	0.89
Cytoplasmic	97	132	0.94
Transmembrane Helix	133	158	0.84
Non-Cytoplasmic	159	165	0.90
Transmembrane Helix	166	184	0.93
Cytoplasmic	185	191	0.69
Transmembrane Helix	192	213	0.87
Non-Cytoplasmic	214	225	0.89
Transmembrane Helix	226	247	0.84
Cytoplasmic	248	261	0.82
Transmembrane Helix	262	286	0.89
Non-Cytoplasmic	287	306	0.98
Transmembrane Helix	307	331	0.87
Cytoplasmic	332	347	0.94
Transmembrane Helix	348	368	0.92
Non-Cytoplasmic	369	373	0.81
Transmembrane Helix	374	395	0.90
Cytoplasmic	396	414	0.90
Transmembrane Helix	415	439	0.87
Non-Cytoplasmic	440	483	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENGEKAAET VVVGNYVEME KDGKALDIKS KLSDMFWHGG SAYDAWFSCA SNQVAQVLLT  60
   61 LPYSFSQLGM LSGILFQLFY GILGSWTAYL ISILYVEYRT RKEREKVNFR NHVIQWFEVL 120
  121 DGLLGKHWRN VGLAFNCTFL LFGSVIQLIA CASNIYYIND NLDKRTWTYI FGACCATTVF 180
  181 IPSFHNYRIW SFLGLLMTTY TAWYLTIASI LHGQVEGVKH SGPSKLVLYF TGATNILYTF 240
  241 GGHAVTVEIM HAMWKPQKFK SIYLFATLYV LTLTLPSASA VYWAFGDLLL NHSNAFALLP 300
  301 KNLYRDFAVV LMLIHQFITF GFACTPLYFV WEKLIGMHEC RSMCKRAAAR LPVVIPIWFL 360
  361 AIIFPFFGPI NSTVGSLLVS FTVYIIPALA HIFTFRSSAA RENAVEQPPR FLGRWTGAFT 420
  421 INAFIVVWVF IVGFGFGGWA SMINFVHQID TFGLFTKCYQ CPPPVMVSPP PISHPHFNHT 480
  481 HGL