YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7262697
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITTLRVGHQ NISTRREPPA ISGYFFNLLF SFFHVILSIP CHGRSQILFR MRSGGLEMMS  60
   61 SSAIVAFNLK EGKNWWWDVN ESPVWQDRIF HVLAVLYGIV SVIAVIQLVR IQLRVPEYGW 120
  121 TTQKVFHFLN FMVNGVRALV FLFRRDAQNM QPEILQHILL DIPSLAFFTT YALLVLFWAE 180
  181 IYYQARAVST DGLRPSFFTI NAVVYVIQIA LWLVLWWKPV HLMVIISKMF FAGVSLFAAL 240
  241 GFLLYGGRLF LMLQRFPVES KGRRKKLQEV GYVTTICFTC FLIRCIMMCF DAFDDAADLD 300
  301 VLDHPILNFI YYLLVEILPS SLVLFILRKL PPKRGITQYH QIQ

Type	Start	End	Confidence
Cytoplasmic	1	19	0.54
Transmembrane Helix	20	42	0.86
Non-Cytoplasmic	43	88	0.63
Transmembrane Helix	89	111	0.90
Cytoplasmic	112	124	0.79
Transmembrane Helix	125	143	0.85
Non-Cytoplasmic	144	158	0.86
Transmembrane Helix	159	179	0.88
Cytoplasmic	180	196	0.79
Transmembrane Helix	197	216	0.95
Non-Cytoplasmic	217	228	0.77
Transmembrane Helix	229	251	0.89
Cytoplasmic	252	269	0.95
Transmembrane Helix	270	290	0.94
Non-Cytoplasmic	291	308	0.85
Transmembrane Helix	309	327	0.97
Cytoplasmic	328	343	0.94