YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PDCT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAVTKTVA PLRRKANPIN GKHTNGVTID GIFDDHNRQI GPINSQMEDI AQKTDDGGGG  60
   61 EWTSKASFMT WTMHDIIYVA RHHWIPCLFA AGVMFFTVVE YTFQMTPASS QPFDLGFVAT 120
  121 RYLHSILASS PNLNTVLAAL NTILVGMQTT YIGCTWAVEG RPRATIAALF MFTCRGILGY 180
  181 STQLPRPQEF LGSGVDYPVG NVSFFLFYSG HVAGSMIASL DMKRMQRFRL AMVFDILNVL 240
  241 QSIRLLGTRG HYTIDIAVGV GAGILFDSLA GKYEEMSKRH LRNTRCSLIS KDSLVT

Type	Start	End	Confidence
Cytoplasmic	1	81	0.98
Transmembrane Helix	82	103	0.88
Non-Cytoplasmic	104	134	0.85
Transmembrane Helix	135	155	0.82
Cytoplasmic	156	163	0.80
Transmembrane Helix	164	184	0.88
Non-Cytoplasmic	185	201	0.83
Transmembrane Helix	202	220	0.90
Cytoplasmic	221	296	0.61