YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAP11_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALALSLSAC SPPLRRTRRA GFRTSCSIFA NPAQRAKRKL LELISEEDRG LRTQKDPKKR  60
   61 DEIVNAIESM TVIGRSSITT DDSLSATWRL LWTTEKEQLF IIEKAGLFGT TAGDVLQVID 120
  121 VNKRILNNVI TFPPDGVFFV RSDIDIASPQ RVNFRFNSAV LRGKNWELPL PPFGKGWFEN 180
  181 VYMDGEIRVA KDIRGDYLIV DRAPYNWTES FV

Type	Start	End	Confidence
Signal Peptide	1	19	0.75
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	212	0.98