YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX14_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.89
Transmembrane Helix	48	68	0.86
Cytoplasmic	69	77	0.87
Transmembrane Helix	78	99	0.88
Non-Cytoplasmic	100	110	0.79
Transmembrane Helix	111	130	0.90
Cytoplasmic	131	143	0.80
Transmembrane Helix	144	166	0.88
Non-Cytoplasmic	167	176	0.89
Transmembrane Helix	177	200	0.83
Cytoplasmic	201	211	0.80
Transmembrane Helix	212	235	0.85
Non-Cytoplasmic	236	243	0.80
Transmembrane Helix	244	265	0.91
Cytoplasmic	266	282	0.91
Transmembrane Helix	283	306	0.90
Non-Cytoplasmic	307	330	0.86
Transmembrane Helix	331	354	0.88
Cytoplasmic	355	363	0.79
Transmembrane Helix	364	383	0.89
Non-Cytoplasmic	384	390	0.73
Transmembrane Helix	391	411	0.84
Cytoplasmic	412	421	0.80
Transmembrane Helix	422	442	0.92
Non-Cytoplasmic	443	829	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLDLEEVN SMQRGKVHGP FLVENMVCQK NHMLTSKGVF LGSDPLKYAM PLMLLQMSVI  60
   61 IITSRLLYRL LKPLKQGMIS AQVLAGIILG PSLFGQSSAY MQMFLPISGK ITLQTLSNLG 120
  121 FFIHLFLLGL RIDASIIRKA GSKAILIGTA SYALPFSLGN LTVLFLKNTY NLPPDVVHCI 180
  181 STVISLNAMT SFPVTTTVLA ELNILNSDLG RLATNCSIVC EAFSWIVALV FRMFLRDGTL 240
  241 ASVWSFVWVT ALILVIFFVC RPAIIWLTER RSISIDKAGE IPFFPIIMVL LTISLTSEVL 300
  301 GVHAAFGAFW LGVSLPDGPP LGTGLTTKLE MFATSLMLPC FISISGLQTN FFIIGESHVK 360
  361 IIEAVILITY GCKFLGTAAA SAYCNIQIGD AFSLALLMCC QGVIEIYTCV MWKDEKVLNT 420
  421 ECFNLLIITL LLVTGISRFL VVCLYDPSKR YRSKSKRTIL DTRQRNLQFR LLLCVYNVEN 480
  481 VPSMVNLLEA SYPSRFSPIS VFTLHLVELK GRAHAVLVPH HQMNKLDPNT VQSTHIVNGF 540
  541 QRFEQQNQGT LMAQHFTAAA PFSSINDDIC TLALDKKATL IVIPFHKQYA IDGTVDHVNP 600
  601 SIRNINLNVL EKAPCSVGIF IDRGETEGRR SVLMSYTWRN VAVIFIEGRD DAEALAFSMR 660
  661 IAEHPEVSVT MIHFRHKSSL QQNHVVDVES ELAESYLIND FKNFAMSKPK ISYREEIVRD 720
  721 GVETTQVISS LGDSFDLVVV GRDHDLESSV LYGLTDWSEC PELGVIGDMF ASSDFHFSVL 780
  781 VIHQQEGDSL AMDNSYKLPA SPHRVGDPRV HPRFSVEEGF TSVDLHSNR