YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCMH_ARATH
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKTDEERKK AQMLDARARN ISHNVRCTEC GSQSIEDSQA DIAILLRQLI RNEIGAGKTD  60
   61 KEIYSKLEDE FGETVLYAPK FDLQTAALWL TPVIIAGGTA AGIVYQKHRL RKNVDIMALN 120
  121 LIRGVPLTPK ERVTILDVLI PPSPPPQGVV SRLRRWLNR

Type	Start	End	Confidence
Non-Cytoplasmic	1	85	0.82
Transmembrane Helix	86	105	0.66
Cytoplasmic	106	159	0.50