YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8953699
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRSVASAV TPVSSSSLLP NSKPIFCLKT LSGYRSSSFC GGCIRKINHK PLRMTSSNIT  60
   61 PRAMATQQLE NADQLIDSVE TFIFDCDGVI WKGDKLIEGV PETLDMLRAK GKRLVFVTNN 120
  121 STKSRKQYGK KFETLGLNVN EEEIFASSFA AAAYLQSINF PKDKKVYVIG EEGILKELEL 180
  181 AGFQYLGGPD DGKRQIELKP GFLMEHDHDV GAVVVGFDRY FNYYKIQYGT LCIRENPGCL 240
  241 FIATNRDAVT HLTDAQEWAG GGSMVGALVG STQREPLVVG KPSTFMMDYL ADKFGIQKSQ 300
  301 ICMVGDRLDT DILFGQNGGC KTLLVLSGIT NLQHFIHFVF VDLKVLLQSL CWKALRTRYN 360
  361 QISTPARSPI FCLRKPQLYN LVSPASITL

Type	Start	End	Confidence
Signal Peptide	1	17	0.89
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	389	0.99