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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VHAA2_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESHGGGGG CCPPMDLMRS EPMQLVQVIV PMESAHLTVS YLGDLGLVQF KDLNSEKSPF  60
   61 QRTYAAQIKR CGEMARKIRF FKEQMSKAGV TPKETLDREN DIDLDDVEVK LEELEAELVE 120
  121 INANNDKLQR SYNELVEYKL VLEKAGEFFA SAHRSATAQQ SEIETEQVGE DLLEAPLLQE 180
  181 EKSVDPTKQV KLGFLTGLVP REKSMVFERI LFRATRGNIF IRQSVIEESV VDPNSGEKAE 240
  241 KNVFVVFYSG ERAKSKILKI CEAFGANRYP FSEDLGKQAQ MMTEVSGRLS ELKTTIGAGL 300
  301 DQRNILLETI GDKFEQWNLK IRKEKAIYHT LNMLSLDVTK KCLVGEGWSP VFAATEIQDA 360
  361 LHRAAVDSNS QVGSIFQVLR TKEMPPTFFR TNKFTTAFQE IVDAYGVAKY QEANPSVFTI 420
  421 VTFPFLFAVM FGDWGHGICL LLATMYLILR EKKLSSQKLG DIMEMAFGGR YVIFMMSLFS 480
  481 IYTGLIYNEF FSIPYPLFAS SAYDCRDVSC SEATTIGLIK TRDTYPFGVD PVWHGTRSEL 540
  541 PFLNSLKMKM SILIGVAQMN LGIIMSFFNA KFFKSAVNIW FQFVPQMIFL NCLFGYLSVL 600
  601 IIIKWCTGSQ ADLYHVMIYM FLSPMDDLGE NQLFPNQKIV QLTFLFLALV SVPWMLLPKP 660
  661 FILKKQHEAR HQGLSYAQLD ETDESLQVET NGGGHGHEEF EFSEIFVHQL IHTIEFVLGA 720
  721 VSNTASYLRL WALSLAHSEL SSVFYEKVLL MAWGFNNVFI WIVGILVFIF ATVGVLLVME 780
  781 TLSAFLHALR LHWVEYQNKF YEGDGYKFAP FTFTLVGNED E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle