YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGAL1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRAMVIKM PILMILISSM VMTMVESSRS VNNGHDDSEI LRRHLLTNGL GVTPPMGWNS  60
   61 WNHFSCNIDE KMIKETADAL VTTGLSKLGY NYVNIDDCWA EISRDSKGSL VPKKSTFPSG 120
  121 IKAVADYVHS KGLKLGIYSD AGYFTCSKTM PGSLGYEEHD AKTFAEWGID YLKYDNCNSD 180
  181 GSKPTVRYPV MTRALMKSGR PIFHSLCEWG DMHPALWGSP VGNSWRTTND IKDTWLSMIS 240
  241 IADMNEVYAE HARPGGWNDP DMLEVGNGGM TKDEYIVHFS IWAISKAPLL LGCDIRNMTK 300
  301 ETMEIVANKE VIAINQDPHG VQAKKVRMEG DLEVWAGPLS GYRVALLLLN RGPSRTSITA 360
  361 LWEDIEIPAN SIVEARDLWE HQTLKQKFVG NLTATVDSHA CKLYVLKPVA

Type	Start	End	Confidence
Signal Peptide	1	27	0.84
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	410	0.99