YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ASMT_RAT
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGREGELD RDFRVLMSLA HGFMVSQVLF AALDLGIFDL AAQGPVAAEA VAQTGGWSPR  60
   61 GTQLLMDACT RLGLLRGAGD GSYTNSALSS TFLVSGSPQS QRCMLLYLAG TTYGCWAHLA 120
  121 AGVREGRNQY SRAVGISAED PFSAIYRSEP ERLLFMRGLQ ETWSLCGGRV LTAFDLSRFR 180
  181 VICDLGGGSG ALAQEAARLY PGSSVCVFDL PDVIAAARTH FLSPGARPSV RFVAGDFFRS 240
  241 RLPRADLFIL ARVLHDWADG ACVELLGRLH RACRPGGALL LVEAVLAKGG AGPLRSLLLS 300
  301 LNMMLQAEGW ERQASDYRNL ATRAGFPRLQ LRRPGGPYHA MLARRGPRPG IITGVGSNTT 360
  361 GTGSFVTGIR RDVPGARSDA AGTGSGTGNT GSGIMLQGET LESEVSAPQA GSDVGGAGNE 420
  421 PRSGTLKQGD WK

Type	Start	End	Confidence
Cytoplasmic	1	14	0.70
Transmembrane Helix	15	37	0.62
Non-Cytoplasmic	38	432	0.76