YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149035734, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.46
Transmembrane Helix	28	49	0.91
Cytoplasmic	50	69	0.63
Transmembrane Helix	70	90	0.90
Non-Cytoplasmic	91	103	0.59
Transmembrane Helix	104	125	0.90
Cytoplasmic	126	228	0.71
Transmembrane Helix	229	249	0.87
Non-Cytoplasmic	250	269	0.69
Transmembrane Helix	270	291	0.87
Cytoplasmic	292	302	0.72
Transmembrane Helix	303	327	0.89
Non-Cytoplasmic	328	339	0.64
Transmembrane Helix	340	362	0.83
Cytoplasmic	363	377	0.66
Transmembrane Helix	378	402	0.66
Non-Cytoplasmic	403	414	0.66
Transmembrane Helix	415	444	0.67
Cytoplasmic	445	570	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWCQQAGLS MVLGAFLARG RAVCRHNGLL ILSVLSVIVG CLLGFFLRTQ RLSPQEISYF  60
   61 QFPGELLMRM LKMLILPLVV SSLMSGLASL DAKTSSRLGI LTVAYYLWTT FLAVVVGIIM 120
  121 VSIIHPGGAA QKETTEQSGK PVMSSADALL DLVRNMFPAN LVEATFKQYR TKTTPVIKSP 180
  181 KGAAEEAPPR GIVIYGVQED NGSRVQNFAL DLTPPPEIVY KSEPGTSDGM NVLGIVIFSA 240
  241 TMGIMLGRMG DSGTPLVSFC QCLNESVMKI VAVAGWYFPF GIVFLIAGKI LEMDDPKAVG 300
  301 KKLGFYAVTV VCGLVVHGLL ILPLLYFLIT RKNPIVFIRG VLQALLIALA TSSSSATLPI 360
  361 TFKCLLENNH IDRRIARFVL PVGATINMDG TALYEAVAAI FIAQVNNYEL DFGQIITISI 420
  421 TATAASIGAA GIPQAGLVTM VIVLTSVGLP TDDINLIIAV DWALDRFRTM INVLGDALAA 480
  481 GIMAHICRKD FAQDMGTEKL LPCETKPVTL QEIVAAQQNG CVKSVAEASE LTLGPKCPHH 540
  541 IPVQVEQDEE LATASLDHCT IEINELETNV