YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157823827, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNRKPRPG CDSTLPGAAL SLSPGKAMNI STWSTLVTPE SCHRLAASGH SLLIVLHYNH  60
   61 SGRLASRGGP EDNGGLGMLR GPSVAAGCLV VLENAMVLAA IAIHMRSRRW VYYCLLNITL 120
  121 SDLLTGLAYV VNVLLSGTRT FQLSPVHWFL REGLLFMALA ASTFSLLFTA GERFATMVRV 180
  181 AESGATKTSR VYGCIGLCWL LAATLGLLPL LGWNCVCAFQ RCSSLLPLYS KGYVLFCVVV 240
  241 FALILVTILS LYGAIFRVVR ANGQKSPRPP ARRKSRRLLN TVLMILVAFV VCWGPLFGLL 300
  301 LADIFGSNVW AQEYLRGMDW ILALAVLNSA INPLIYSFRS REVQHAVLTF LCCGCLRLGL 360
  361 RGPGDCLTRI TEAHSGASTT DSSLRPRDSF RTSRSLSFKM REPLSSVSSI RSA

Type	Start	End	Confidence
Cytoplasmic	1	41	0.53
Transmembrane Helix	42	58	0.36
Non-Cytoplasmic	59	82	0.78
Transmembrane Helix	83	103	0.83
Cytoplasmic	104	110	0.86
Transmembrane Helix	111	133	0.88
Non-Cytoplasmic	134	152	0.80
Transmembrane Helix	153	171	0.94
Cytoplasmic	172	190	0.89
Transmembrane Helix	191	211	0.94
Non-Cytoplasmic	212	232	0.89
Transmembrane Helix	233	256	0.94
Cytoplasmic	257	277	0.92
Transmembrane Helix	278	301	0.91
Non-Cytoplasmic	302	317	0.89
Transmembrane Helix	318	338	0.87
Cytoplasmic	339	413	0.90