YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS  60
   61 SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT RPRRIFLLDF ACYKPDSSLI 120
  121 CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE 180
  181 TVMFGAIDAV LEKTGVNPKD IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG 240
  241 CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS 300
  301 NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK 360
  361 TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD FKLAFEHFCI HAGGRAVLDE 420
  421 IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC 480
  481 NSAVWRALRT IDPSKEKKKK TNPWIDEIHE FPVPVPRTSP VTSSSESR

Type	Start	End	Confidence
Cytoplasmic	1	36	0.97
Transmembrane Helix	37	59	0.88
Non-Cytoplasmic	60	77	0.83
Transmembrane Helix	78	98	0.95
Cytoplasmic	99	230	0.96
Transmembrane Helix	231	251	0.80
Non-Cytoplasmic	252	528	0.75