YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149032575, gi...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLDLDETGN LSDHKNTGNF LMEFQVKNVP SERVATQKIL SVIGECLDNF GPGCVGVQKI  60
   61 LNARCPLVRF SHQGSGFQCD LTANNSIALK SSELLYIYGS LDSRVRALVF GVRCWARAHS 120
  121 LTSSIPGAWI TNFSLTMMVI FFLQRRSPPI LPTLDSLKSM ADAEDRCILE GNNCTFIQDI 180
  181 NKIKPSGNTE TLELLLKEFF EYFGNFAFNK NSINIRQGRE QNKPDSSPLY IQNPFETSLN 240
  241 ISKNVSQNQL QKFVELARDS AWILEQEKKD QPSSSSHPWG LAALLLPPGA GQTSLSRKKK 300
  301 KKPMSEKVKG LLASIKSNSP DRSTDASGKR AVSTQA

Type	Start	End	Confidence
Cytoplasmic	1	120	0.81
Transmembrane Helix	121	143	0.75
Non-Cytoplasmic	144	336	0.91