YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHT21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	122	0.67
Transmembrane Helix	123	143	0.88
Non-Cytoplasmic	144	155	0.50
Transmembrane Helix	156	174	0.86
Cytoplasmic	175	189	0.49
Transmembrane Helix	190	215	0.78
Non-Cytoplasmic	216	232	0.62
Transmembrane Helix	233	253	0.93
Cytoplasmic	254	261	0.52
Transmembrane Helix	262	285	0.84
Non-Cytoplasmic	286	290	0.58
Transmembrane Helix	291	313	0.86
Cytoplasmic	314	325	0.62
Transmembrane Helix	326	347	0.90
Non-Cytoplasmic	348	354	0.53
Transmembrane Helix	355	375	0.87
Cytoplasmic	376	414	0.72
Transmembrane Helix	415	437	0.74
Non-Cytoplasmic	438	470	0.58
Transmembrane Helix	471	492	0.89
Cytoplasmic	493	500	0.91
Transmembrane Helix	501	521	0.83
Non-Cytoplasmic	522	526	0.73
Transmembrane Helix	527	547	0.88
Cytoplasmic	548	556	0.87
Transmembrane Helix	557	579	0.93
Non-Cytoplasmic	580	587	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPYRFSSV RNHSLLLKTS HLCTPRSALG CCFSPKESPF FRKNTAQFLS PQKHTSLPLK  60
   61 LVCPLASFSS YADSEGEEQH HADQPIQNPH ESSTVSNESD GKGNAEATGD FSGMAQAFHI 120
  121 SSTTARAISI VIAFSALTLP IFMKSLGQGL ALKTKLLSYA TLLFGFYMAW NIGANDVANA 180
  181 MGTSVGSGAL TIRQAVMTAA VLEFSGALLM GTHVTSTMQK GILMANVFQG KDMLLFAGLL 240
  241 SSLAAAGTWL QVASYYGWPV STTHCIVGSM VGFGLVYGGA GAVFWSSLAK VASSWVISPI 300
  301 LGALVSFLVY KCIRRFVYSA PNPGQAAAAA APVAVFVGVA SISSAALPLS KIFPIALSQA 360
  361 LACGVAGAIV FDRIIRKQLG HLLAKTKSPE TSQNQPKTIG FLSDIAGPTG TQLEIVYGIF 420
  421 GYMQVLSACF MSFAHGGNDV SNAIGPLAAA LSILQNGAAA GGAEIVIPMD VLAWGGFGIV 480
  481 AGLTMWGYRV IATIGKKITE LTPTRGFAAE FAAASVVLFA SKLGLPISAT HTLVGAVMGV 540
  541 GFARGLNSVR AETVREIVAS WLVTIPVGAT LAVIYTWIFT KILSFVL