YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3386605, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSSNSDQN EGTPTSSVSS PYRRTYSDIS GLSHRFDVQS FYNRPSNTNA VVLSGHEEDV  60
   61 SEDAEEPKDD VVNDVHGDGD EEDSDIDSAE DAELEMMRER FAKLLLGEDM SGSGKGVCTA 120
  121 VTVSNSITNL YGLSSSSLFK YALFSKQSIY SVACVCCVIA ATVFGQSLRL QPLSTEKKDL 180
  181 WKREMNCFMS ICDYIVEVIP RSLGTNVEIT ETKLRSDILM SLPALRKLDN MLMEILDSFT 240
  241 ENEFWYVERG SSSMNSGGGG RDSGTFRKVV VQRKDEKWWL PVPCVPAEGL SEEERKHLRH 300
  301 KRDCASQIHK AALAINDSTL NDMDIPDSYL TTLPKSGKAS VGDVIYKQLC TAEKFYPDQL 360
  361 LDILKITSEH EALELADKVE ASLVTWRRKT GGLTHSKSSW DMMKDISGDA DRGNDKNHIL 420
  421 AARARSLLFC LKQRYPELSQ TSLDICKIQF NRDVGKAVLE SYSRVLEGLA YNVVSWIDDV 480
  481 LYVDRTVRNR DD

Type	Start	End	Confidence
Cytoplasmic	1	146	0.73
Transmembrane Helix	147	165	0.72
Non-Cytoplasmic	166	492	0.96