YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR41_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	41	0.92
Non-Cytoplasmic	42	56	0.84
Transmembrane Helix	57	80	0.82
Cytoplasmic	81	87	0.62
Transmembrane Helix	88	109	0.87
Non-Cytoplasmic	110	133	0.83
Transmembrane Helix	134	156	0.90
Cytoplasmic	157	171	0.90
Transmembrane Helix	172	194	0.91
Non-Cytoplasmic	195	201	0.73
Transmembrane Helix	202	221	0.95
Cytoplasmic	222	318	0.91
Transmembrane Helix	319	339	0.82
Non-Cytoplasmic	340	355	0.74
Transmembrane Helix	356	377	0.90
Cytoplasmic	378	395	0.76
Transmembrane Helix	396	415	0.80
Non-Cytoplasmic	416	426	0.66
Transmembrane Helix	427	449	0.83
Cytoplasmic	450	465	0.58
Transmembrane Helix	466	488	0.87
Non-Cytoplasmic	489	506	0.73
Transmembrane Helix	507	529	0.88
Cytoplasmic	530	548	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSDSGDKE AHRSSKHGGW ITLPFMLVTL LGMSITYFGW VMNLIVFLIE EFNIKSIAAV  60
   61 QISNIVNGVV NMLPVVAAIL ADSFFGNIPV ISASAFISLT GISLLTLIAS LDYLRPRPCE 120
  121 TGSILCQSPS KLQLGILYAA LALVITGTAG TRFILASAGA NQYKKPKEQG RFFNWYFFTL 180
  181 YGGAITGTTA IVYAQDNASW KLGFGLCVAA NLISFIIFVA GKRLYEHDQP LGSPYTSLVR 240
  241 VLVAATMKRK AVISYKDEDY HHRELEKETK TYVAMPSKSF RFLNRAALKT EGDSNNNMWR 300
  301 LCSVQEVEDF KAVLRLVPLW TSVMFLSAPL AVQMSMTVLQ AMVMDRKLGP HFKVSAGSMQ 360
  361 VIALVSGCVF IILNNWTTYP MYQKLIRKPL TPLQKVGIGH VLTILSMAIS AVVEAKRLKT 420
  421 VENSHLMSVL WLVPALVING IGEAFHFPAN IAIFYGEFPE SLRNTATSLT SVVMGISFYL 480
  481 STALIDVIQR TTKWLPNDIN HGRVDNVYLV LVIIGVSNFG YFLVCSWFYK YRNLKNDDHE 540
  541 QDLKDVTN