YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9758059
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.94
Transmembrane Helix	40	61	0.86
Non-Cytoplasmic	62	67	0.64
Transmembrane Helix	68	92	0.81
Cytoplasmic	93	120	0.88
Transmembrane Helix	121	143	0.85
Non-Cytoplasmic	144	163	0.95
Transmembrane Helix	164	186	0.87
Cytoplasmic	187	195	0.83
Transmembrane Helix	196	216	0.95
Non-Cytoplasmic	217	236	0.88
Transmembrane Helix	237	258	0.89
Cytoplasmic	259	274	0.94
Transmembrane Helix	275	297	0.90
Non-Cytoplasmic	298	326	0.94
Transmembrane Helix	327	346	0.92
Cytoplasmic	347	365	0.91
Transmembrane Helix	366	386	0.93
Non-Cytoplasmic	387	394	0.70
Transmembrane Helix	395	414	0.96
Cytoplasmic	415	426	0.92
Transmembrane Helix	427	449	0.88
Non-Cytoplasmic	450	461	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISGSMENLD EIRTDIVEST APLLQESSSE SNGGGEFNGA SFSGAVFNLA TTIIGAGIMA  60
   61 LPATMKILGL IPGITIIVLM AFLTDASIEF LLRFSNIGNQ RSYGGVMDDS FGKCGRIMLQ 120
  121 VSILVSNIGV LIVYMIIIGD VLAGKNEYGI HHAGMLEGWF GISWWNRRTF VLLVTTLTVF 180
  181 APLTCFKRID SLRFTSAISV ALAVVFLVIT AGITIIKLFT DGLMMPRLLP NVTDLSSFWK 240
  241 LFTVVPVLVN AYICHYNVHS IQNELEDPSR IKPVVRSALA MCSSVYVMTS LFGYLLFGDG 300
  301 TLDDVLANFD TDLGIPFGSV LNDAVRFSYA AHLMLVFPVV FYPLRINIDG LIFPTAPPLT 360
  361 SSESDLRFGS ITAGLIAVIF LGANFIPSIW DAFQFTGATA AVCIGFIFPA AVILKDRHNQ 420
  421 ATKRDKTIAI CMIVLAVFSN AIAIYSDAYA LFKKHTYVYP I