YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	43	0.91
Non-Cytoplasmic	44	81	0.97
Transmembrane Helix	82	103	0.90
Cytoplasmic	104	110	0.86
Transmembrane Helix	111	133	0.88
Non-Cytoplasmic	134	136	0.64
Transmembrane Helix	137	159	0.81
Cytoplasmic	160	169	0.80
Transmembrane Helix	170	192	0.88
Non-Cytoplasmic	193	200	0.72
Transmembrane Helix	201	220	0.93
Cytoplasmic	221	280	0.94
Transmembrane Helix	281	304	0.85
Non-Cytoplasmic	305	316	0.79
Transmembrane Helix	317	340	0.90
Cytoplasmic	341	346	0.94
Transmembrane Helix	347	369	0.86
Non-Cytoplasmic	370	382	0.80
Transmembrane Helix	383	404	0.92
Cytoplasmic	405	422	0.82
Transmembrane Helix	423	444	0.90
Non-Cytoplasmic	445	450	0.73
Transmembrane Helix	451	473	0.90
Cytoplasmic	474	508	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVGIVIGD GKKEYPGKLT LYVTVTCIVA AMGGLIFGYD IGISGGVTTM DSFQQKFFPS  60
   61 VYEKQKKDHD SNQYCRFDSV SLTLFTSSLY LAALCSSLVA SYVTRQFGRK ISMLLGGVLF 120
  121 CAGALLNGFA TAVWMLIVGR LLLGFGIGFT NQSVPLYLSE MAPYKYRGAL NIGFQLSITI 180
  181 GILVANVLNF FFSKISWGWR LSLGGAVVPA LIITVGSLIL PDTPNSMIER GQFRLAEAKL 240
  241 RKIRGVDDID DEINDLIIAS EASKLVEHPW RNLLQRKYRP HLTMAILIPA FQQLTGINVI 300
  301 MFYAPVLFQT IGFGSDAALI SAVVTGLVNV GATVVSIYGV DKWGRRFLFL EGGFQMLISQ 360
  361 VAVAAAIGAK FGVDGTPGVL PKWYAIVVVL FICIYVAAFA WSWGPLGWLV PSEIFPLEIR 420
  421 SAAQSITVSV NMIFTFLIAQ VFLMMLCHLK FGLFIFFAFF VVVMSIFVYL FLPETRGVPI 480
  481 EEMNRVWRSH WYWSKFVDAE KNLTKVVI