YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15228851, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	44	0.81
Non-Cytoplasmic	45	52	0.62
Transmembrane Helix	53	75	0.87
Cytoplasmic	76	99	0.89
Transmembrane Helix	100	122	0.93
Non-Cytoplasmic	123	146	0.94
Transmembrane Helix	147	168	0.90
Cytoplasmic	169	179	0.81
Transmembrane Helix	180	201	0.93
Non-Cytoplasmic	202	220	0.91
Transmembrane Helix	221	241	0.93
Cytoplasmic	242	259	0.86
Transmembrane Helix	260	280	0.93
Non-Cytoplasmic	281	307	0.94
Transmembrane Helix	308	328	0.89
Cytoplasmic	329	348	0.90
Transmembrane Helix	349	368	0.95
Non-Cytoplasmic	369	375	0.68
Transmembrane Helix	376	398	0.88
Cytoplasmic	399	407	0.91
Transmembrane Helix	408	430	0.90
Non-Cytoplasmic	431	435	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII  60
   61 TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI AVQIATMVAT FGCMIIFSII 120
  121 IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA 180
  181 VSFLLAVLFV VISSVLAISA LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN 240
  241 VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI 300
  301 GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC 360
  361 FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG VSTSREKIVA AIMLVLAVAT 420
  421 SIIAISTNLY SLAAN