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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PEPR2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.54
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNLGLLEIT LLCSLFVYFR IDSVSSLNSD GLALLSLLKH FDKVPLEVAS TWKENTSETT  60
   61 PCNNNWFGVI CDLSGNVVET LNLSASGLSG QLGSEIGELK SLVTLDLSLN SFSGLLPSTL 120
  121 GNCTSLEYLD LSNNDFSGEV PDIFGSLQNL TFLYLDRNNL SGLIPASVGG LIELVDLRMS 180
  181 YNNLSGTIPE LLGNCSKLEY LALNNNKLNG SLPASLYLLE NLGELFVSNN SLGGRLHFGS 240
  241 SNCKKLVSLD LSFNDFQGGV PPEIGNCSSL HSLVMVKCNL TGTIPSSMGM LRKVSVIDLS 300
  301 DNRLSGNIPQ ELGNCSSLET LKLNDNQLQG EIPPALSKLK KLQSLELFFN KLSGEIPIGI 360
  361 WKIQSLTQML VYNNTLTGEL PVEVTQLKHL KKLTLFNNGF YGDIPMSLGL NRSLEEVDLL 420
  421 GNRFTGEIPP HLCHGQKLRL FILGSNQLHG KIPASIRQCK TLERVRLEDN KLSGVLPEFP 480
  481 ESLSLSYVNL GSNSFEGSIP RSLGSCKNLL TIDLSQNKLT GLIPPELGNL QSLGLLNLSH 540
  541 NYLEGPLPSQ LSGCARLLYF DVGSNSLNGS IPSSFRSWKS LSTLVLSDNN FLGAIPQFLA 600
  601 ELDRLSDLRI ARNAFGGKIP SSVGLLKSLR YGLDLSANVF TGEIPTTLGA LINLERLNIS 660
  661 NNKLTGPLSV LQSLKSLNQV DVSYNQFTGP IPVNLLSNSS KFSGNPDLCI QASYSVSAII 720
  721 RKEFKSCKGQ VKLSTWKIAL IAAGSSLSVL ALLFALFLVL CRCKRGTKTE DANILAEEGL 780
  781 SLLLNKVLAA TDNLDDKYII GRGAHGVVYR ASLGSGEEYA VKKLIFAEHI RANQNMKREI 840
  841 ETIGLVRHRN LIRLERFWMR KEDGLMLYQY MPNGSLHDVL HRGNQGEAVL DWSARFNIAL 900
  901 GISHGLAYLH HDCHPPIIHR DIKPENILMD SDMEPHIGDF GLARILDDST VSTATVTGTT 960
  961 GYIAPENAYK TVRSKESDVY SYGVVLLELV TGKRALDRSF PEDINIVSWV RSVLSSYEDE1020
 1021 DDTAGPIVDP KLVDELLDTK LREQAIQVTD LALRCTDKRP ENRPSMRDVV KDLTDLESFV1080
 1081 RSTSGSVH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle