YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPR3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMWGAGRSMA WFSAGSGSVN VSIDPAEEPT GPATLLPSPR AWDVVLCISG TLVSCENALV  60
   61 VAIIVGTPAF RAPMFLLVGS LAVADLLAGL GLVLHFAADF CIGSPEMSLV LVGVLATAFT 120
  121 ASIGSLLAIT VDRYLSLYNA LTYYSETTVT RTYVMLALVW VGALGLGLVP VLAWNCRDGL 180
  181 TTCGVVYPLS KNHLVVLAIV FFMVFGIMLQ LYAQICRIVC RHAQQIALQR HLLPASHYVA 240
  241 TRKGIATLAV VLGAFAACWL PFTVYCLLGD ANSPPLYTYL TLLPATYNSM INPVIYAFRN 300
  301 QDVQKVLWAI CCCCSTSKIP FRSRSPSDV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.72
Transmembrane Helix	8	26	0.55
Non-Cytoplasmic	27	43	0.74
Transmembrane Helix	44	65	0.82
Cytoplasmic	66	74	0.75
Transmembrane Helix	75	98	0.91
Non-Cytoplasmic	99	108	0.84
Transmembrane Helix	109	131	0.92
Cytoplasmic	132	151	0.85
Transmembrane Helix	152	174	0.91
Non-Cytoplasmic	175	193	0.88
Transmembrane Helix	194	213	0.95
Cytoplasmic	214	243	0.85
Transmembrane Helix	244	267	0.85
Non-Cytoplasmic	268	275	0.82
Transmembrane Helix	276	298	0.64
Cytoplasmic	299	329	0.68