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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|12597786
Protein type: Transmembrane
Type Confidence: 0.56
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSFFLTIV AAAFAIGFFI FLRKLRIHQE NEDVGSSSTS PPSSLASSTS PPSTLSSSTS  60
   61 HPSSSTSPPS SLSCTGTHHV FPSFRGDDVR RNFLSHIQKE FRRKGITPFI DNEIRRGESI 120
  121 GPELIKAIRE SKIAIVLLSR NYASSKWCLE ELVEIMKCKK EFGLTVFAIF YEVDPSHVKK 180
  181 LTGEFGAVFQ KTCKGRTKEN IMRWRQAFEE VATIAGYDSR NWENEAAMIE EIAIEISKRL 240
  241 INSSPFSGFE GLIGMKAHIE KMKQLLCLDS TDERRTVGIS GPSGIGKSTI ARVLHNQISD 300
  301 GFQMSVFMKF KPSYTRPICS DDHDVKLQLE QQFLAQLINQ EDIKIHQLGT AQNFVMGKKV 360
  361 LIVLDGVDQL VQLLAMPKAV CLGPGSRIII TTQDQQLLKA FQIKHIYNVD FPPDHEALQI 420
  421 FCIHAFGHDS PDDGFEKLAT KVTRLAGNLP LGLRVMGSHF RGMSKEDWKG ELPRLRIRLD 480
  481 GEIGSILKFS YDVLDDEDKD LFLHIACFFN DEGIDHTFED TLRHKFSNVQ RGLQVLVQRS 540
  541 LISEDLTQPM HNLLVQLGRE IVRNQSVYEP GKRQFLVDGK EICEVLTSHT GSESVIGINF 600
  601 EVYWSMDELN ISDRVFEGMS NLQFFRFDEN SYGRLHLPQG LNYLPPKLRI LHWDYYPMTS 660
  661 LPSKFNLKFL VKIILKHSEL EKLWEGIQPL VNLKVMDLRY SSHLKELPNL STAINLLEMV 720
  721 LSDCSSLIEL PSSIGNATNI KSLDIQGCSS LLKLPSSIGN LITLPRLDLM GCSSLVELPS 780
  781 SIGNLINLPR LDLMGCSSLV ELPSSIGNLI NLEAFYFHGC SSLLELPSSI GNLISLKILY 840
  841 LKRISSLVEI PSSIGNLINL KLLNLSGCSS LVELPSSIGN LINLKKLDLS GCSSLVELPL 900
  901 SIGNLINLQE LYLSECSSLV ELPSSIGNLI NLKTLNLSEC SSLVELPSSI GNLINLQELY 960
  961 LSECSSLVEL PSSIGNLINL KKLDLSGCSS LVELPLSIGN LINLKTLNLS ECSSLVELPS1020
 1021 SIGNLINLQE LYLSECSSLV ELPSSIGNLI NLKKLDLSGC SSLVELPLSI GNLINLKTLN1080
 1081 LSGCSSLVEL PSSIGNLNLK KLDLSGCSSL VELPSSIGNL INLKKLDLSG CSSLVELPLS1140
 1141 IGNLINLQEL YLSECSSLVE LPSSIGNLIN LQELYLSECS SLVELPSSIG NLINLKKLDL1200
 1201 NKCTKLVSLP QLPDSLSVLV AESCESLETL ACSFPNPQVW LKFIDCWKLN EKGRDIIVQT1260
 1261 STSNYTMLPG REVPAFFTYR ATTGGSLAVK LNERHCRTSC RFKACILLVR KGDKIDCEEW1320
 1321 GSVYLTVLEK QSGRKYSLES PTLYPLLTEH LYTFEIEAKG VKSVELVIKF QFGRKKWEIG1380
 1381 ECGIRPLLEE DTHVESSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle