YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALIS3_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.50
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI  60
   61 FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ GDGDKVCNRD LKVTKRMKQP 120
  121 IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF 180
  181 NDTYALSRNN VSLAVNKKGI AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE 240
  241 DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG 300
  301 KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR

Type	Start	End	Confidence
Signal Peptide	1	20	0.50
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	304	0.84
Transmembrane Helix	305	329	0.90
Cytoplasmic	330	349	0.89