YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149025778, gi...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGCHICKLP GRVMGIRVLR FSLVIILVLL LVAGALTNLL PNIKEDKMLT VRREIKSQSK  60
   61 SALDSFTLIM QTYNRTDLLL RLLNHYQAVP NLHKVIVVWN NVGEKGPEEL WNSLGPHPIP 120
  121 VLFKPQTANR MRNRLQVFPE VETNAVLMVD DDVLISAQDL VFAFSIWQQF PDQIVGFVPR 180
  181 KHVSTSSGIY SYGGFELQTP GLGNGDQYSM VLIGASFFHS KYLDLFQKQP AAVHTLIDET 240
  241 QNCDDIAMNF IVSKHTGKSS GIFVKPINII NLEKETNGYS GMWHRAEHFL QRSYCLNKLV 300
  301 NIFSGMPLKY SNIMISQFGF PYANHKSKM

Type	Start	End	Confidence
Cytoplasmic	1	17	0.50
Transmembrane Helix	18	38	0.49
Non-Cytoplasmic	39	329	0.98