YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157786916, gi...
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGLRADGGA AGAAPASSSS SVAAPGQCRG FLSAPVFAGT HSGRAAAAAA AAAAAAAAAS  60
   61 SFAYPGTSER TGSSSSSSSS AVIATRPEAP VAKECPAPAA AATAAAPPGA PALGYGYHFG 120
  121 NGYYSCRMSH GVGLQQNALK SSPHASLGGF PVEKYMDVSG LASSSVPTNE VPARAKEVSF 180
  181 YQGYTSPYQH VPGYIDMVST FGSGEPRHEA YISMEGYQSW TLANGWNSQV YCAKDQPQGS 240
  241 HFWKSSFPGD VALNQPDMCV YRRGRKKRVP YTKLQLKELE NEYAINKFIN KDKRRRISAA 300
  301 TNLSERQVTI WFQNRRVKDK KIVSKLKDTV S

Type	Start	End	Confidence
Cytoplasmic	1	44	0.44
Transmembrane Helix	45	66	0.53
Non-Cytoplasmic	67	331	0.92