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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149021126, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.66
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHTLWAMRL PLLLAFISVI PVAVQLLDSR QFLIYNEDHK RCVDALSAIS VQTATCNPEA  60
   61 ESQKFRWVSE SQIMSVAFKL CLGVPSKTDW ASVTLYACDS KSEFQKWECK NDTLFGIKGT 120
  121 ELYFNYGNRQ EKNIKLYKGS GLWSRWKVYG TTDDLCSRGY EAMYSLLGNA NGAVCAFPFK 180
  181 FENKWYADCT SAGRSDGWLW CGTTTDYDTD KLFGFCPLQF EGSKRLWNTD PLTGILYQIN 240
  241 SKSALTWHQA RASCKQQNAE LLSVTEIHEQ MYLTGLTSSL TSGLWIGLNS LSLSTGWQWA 300
  301 GGSPFRYLNW LPGSPSSEPG KSCVSLNPGK NAKWENLECV QKLGYICKKG NNTLNPFIIP 360
  361 SESDVPTACP NQWWPYAGHC YRIYREEKKI QKYALQACRK EGGDLASIHS IEEFDFIFSQ 420
  421 LGYEPNDELW IGLNDIKIQM YFEWSDGTPV TFTKWLPGEP SHENNRQEDC VVMKGKDGYW 480
  481 ADRACEQPLG YICKMVSQIH TVIPEGAEKG CRKGWKRHGF YCYLIGSTLS TFADANQTCT 540
  541 NEKAYLTTVE DRYEQAFLTS LVGLRPEKYF WTGLSDVQNK GTFRWTVDEQ VQFTHWNADM 600
  601 PGRKAGCVAM KTGVAGGLWD VLSCEEKAKF VCKHWAEGVT RPPEPTTTPE PKCPEDWGTT 660
  661 SKTSMCFKLY AKGKHEKKTW FESRDFCKAI GGELASIKSK DEQQVIWRLI TSSGSYHELF 720
  721 WLGLTYGSPS EGFTWSDGSP VSYENWAYGE PNNYQNVEYC GELKGDPGMS WNDINCEHLN 780
  781 NWICQIQKGK TLLPEPTPAP QDNPPVTADG WVIYKDYQYY FSKEKETMDN ARAFCKKNFG 840
  841 DLATIKSESE KKFLWKYINK NGGQSPYFIG LLISLDKKFI WMDGSKVDFV AWATGEPNFA 900
  901 NDDENCVTMY TNSGFWNDIN CGYPNNFICQ RHNSSINATA MPTTPPTPGG CKEGWHLYNN 960
  961 KCFKIFGFAE EEKKTWKEAR KACIGLKGNL VSIENAKEQA FVTYHMRDST FNAWTGLNDV1020
 1021 NSEHTFLWTD GRGVHYTNWG KGYPGGRRSS LSYEDVDCVV VIGGNSREAG TWMDSTCDSK1080
 1081 QGYICQTQTD PSVPISPTTA PKDGFVKYGK SSYALMKLKS PWHEAEKYCK DRTSLLASIL1140
 1141 DPYSNAFAWM KMHPFNVPIW IALNSNLTNN EYTWTDKWRV RYTNWGTDEP KLKSACVYMD1200
 1201 VDGYWKTSYC NESFYFLCKK SDEIPATEPP QLPGKCPESE QTAWIPFHGH CYYIESSFTR1260
 1261 SWGQASLECL RMGASLVSIE TAAESSFLSY RVEPLKSKTN FWIGMFRNVE GKWLWLNDNP1320
 1321 VSFVNWKTGD PSGERNDCVV LSSSSGLWNN IHCTSYKGFI CKMPKIIDPV TTHSSITTKA1380
 1381 DQRKMDPQPK GSSKAAGVVI VVLLIVIGAG VAAYFFYKKR RVLHIPQEAT FENTLYFNSN1440
 1441 PSPGTSDTKD LVGNIEQNEH AVI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle