YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15238516, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.99
Transmembrane Helix	31	50	0.96
Non-Cytoplasmic	51	57	0.73
Transmembrane Helix	58	78	0.88
Cytoplasmic	79	98	0.89
Transmembrane Helix	99	121	0.86
Non-Cytoplasmic	122	147	0.88
Transmembrane Helix	148	169	0.91
Cytoplasmic	170	208	0.90
Transmembrane Helix	209	229	0.90
Non-Cytoplasmic	230	259	0.85
Transmembrane Helix	260	282	0.89
Cytoplasmic	283	301	0.91
Transmembrane Helix	302	323	0.81
Non-Cytoplasmic	324	365	0.84
Transmembrane Helix	366	388	0.90
Cytoplasmic	389	394	0.71
Transmembrane Helix	395	418	0.88
Non-Cytoplasmic	419	443	0.76
Transmembrane Helix	444	463	0.77
Cytoplasmic	464	481	0.76
Transmembrane Helix	482	505	0.89
Non-Cytoplasmic	506	577	0.69
Transmembrane Helix	578	602	0.88
Cytoplasmic	603	611	0.75
Transmembrane Helix	612	636	0.73
Non-Cytoplasmic	637	652	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENERVEREQ SQFQEDEFID SRKPPPWRKQ ITVRAIVASL LIGIVYSVIC LKLNLTTGLV  60
   61 PNLNISSALL AFVFLKSWTK VLQKAGIATT PFTRQENTIA QTCAVACYSI SLAGGFASYL 120
  121 LGLNRRTYEE TGVNTEGNNP RGIKEPGVGW MTSFLFVTSF IGLVVLVPLR KVMIIDYKLT 180
  181 YPSGTATAVL INGFHTSKGD KTAKKQIRGF IKSFGLSFFW AFFGWFYSGG EKCGFSQFPT 240
  241 FGLQALDKTM TYVGAGMICS HLVNLSLLFG AILSWGIMWP LIARLKGEWF PATLKDNSMQ 300
  301 GLNGYKVFIC IALILGDGLY NFVKILFFTG RSFHSRLSKT NSISTYSTKE SDNLKRENEV 360
  361 FVRESIPLWM ACVGYLFFSL VSIIAIPLMF PQLKWYFVLV AYLLAPSLSF CNAYGAGLTD 420
  421 MNMAYNYGKA ALFVMAALAG KNDGVVAGMV ACGLIKSIVS VSADLMHDFK TGHLTQTSPR 480
  481 SMLVAQAIGT AIGCVVAPLT FFLFYKAFDV GNQNGEYKAP YAMIYRNMAI IGVQGPSALP 540
  541 KHCLELCYGF FAFAVAANLA RDLLPDKPGK WIPLPMAMAV PFLVGGSFAI DMCIGSLVVY 600
  601 VWKKVNRKKA DVMVPAVASG LICGDGLWIL PSSLLALAKV RPPICMNFTA AH