YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR53_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.94
Transmembrane Helix	58	78	0.82
Non-Cytoplasmic	79	86	0.67
Transmembrane Helix	87	108	0.90
Cytoplasmic	109	117	0.77
Transmembrane Helix	118	138	0.93
Non-Cytoplasmic	139	161	0.87
Transmembrane Helix	162	184	0.91
Cytoplasmic	185	204	0.95
Transmembrane Helix	205	226	0.95
Non-Cytoplasmic	227	232	0.82
Transmembrane Helix	233	254	0.92
Cytoplasmic	255	351	0.98
Transmembrane Helix	352	370	0.70
Non-Cytoplasmic	371	391	0.67
Transmembrane Helix	392	414	0.90
Cytoplasmic	415	432	0.69
Transmembrane Helix	433	455	0.87
Non-Cytoplasmic	456	484	0.70
Transmembrane Helix	485	505	0.85
Cytoplasmic	506	520	0.64
Transmembrane Helix	521	543	0.91
Non-Cytoplasmic	544	563	0.73
Transmembrane Helix	564	585	0.91
Cytoplasmic	586	616	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERKPLELES TDNHQNPSSA VYGGSVTAVD SVEEDVQNQK KVVYRGWKVM PFIIGNETFE  60
   61 KLGIIGTLSN LLVYLTAVFN LKSITAATII NAFSGTINFG TFVAAFLCDT YFGRYKTLSV 120
  121 AVIACFLGSF VILLTAAVPQ LHPAACGTAA DSICNGPSGG QIAFLLMGLG FLVVGAGGIR 180
  181 PCNLAFGADQ FNPKSESGKR GIDSFFNWYF FTFTFAQILS LTLVVYVQSN VSWTIGLTIP 240
  241 AVLMFLACLI FFAGDKLYVK IKASGSPLAG IAQVIAVAIK KRGLKPAKQP WLNLYNYYPP 300
  301 KYANSKLKYT DQFRFLDKAA ILTPEDKLQP DGKPADPWKL CTMQQVEEVK CIVRVLPIWF 360
  361 ASSIYYLTIT QQMTYPVFQA LQSDRRLGSG GFVIPAATYV VFLMTGMTVF IVVYDRVLVP 420
  421 TMRRITGLDT GITLLQRIGT GIFFATASLV VAGFVEERRR TFALTKPTLG MAPRKGEISS 480
  481 MSAMWLIPQL SLAGVAEAFA AIGQMEFYYK QFPENMRSFA GSIFYVGGGV SSYLGSFLIA 540
  541 TVHRTTQNSS GGNWLAEDLN KGRLDLFYFM IAGILAVNFA YFLVMSRWYR YKGSDDEVTT 600
  601 YETNENIIKQ QDKNVA