YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAXS7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEIKSLIN VGFLTIISVS YCYCLPPRIK SGVLRLLSIF PVCVLLVVLP LFFSFSIFTS  60
   61 TTAFFLSAIA NSRLILFSFD QGPLFPLPSN LFRFTCFTCF PIQRQQNPKS QDHLSTYVFP 120
  121 VKIAIFVVLL YVHNDIQNLP RTFLLCLHPL YVYLLLEILL TLLRILMTII LGCDLEPHFH 180
  181 EPYLATSLQD FWGRRWNLIV SASLRAIVYT PVRRVCQRVM SSDYAMLIGV FATFVTSGVA 240
  241 HEVVFFYITR AMPTGEVALF FLLHGVCTVA EVAAKRTAFV RRWPVRPVVS WMFTIAFVNV 300
  301 TAGWLFFPQL IRNNLGERCS NEISLLIDFF RSKLFYFPQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.47
Transmembrane Helix	7	25	0.68
Cytoplasmic	26	35	0.64
Transmembrane Helix	36	59	0.85
Non-Cytoplasmic	60	112	0.43
Transmembrane Helix	113	133	0.75
Cytoplasmic	134	149	0.43
Transmembrane Helix	150	172	0.81
Non-Cytoplasmic	173	191	0.48
Transmembrane Helix	192	209	0.47
Cytoplasmic	210	223	0.80
Transmembrane Helix	224	245	0.89
Non-Cytoplasmic	246	256	0.65
Transmembrane Helix	257	274	0.89
Cytoplasmic	275	287	0.75
Transmembrane Helix	288	307	0.95
Non-Cytoplasmic	308	339	0.94