YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149018323, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.55
Transmembrane Helix	64	90	0.76
Non-Cytoplasmic	91	131	0.49
Transmembrane Helix	132	155	0.87
Cytoplasmic	156	162	0.47
Transmembrane Helix	163	186	0.81
Non-Cytoplasmic	187	193	0.45
Transmembrane Helix	194	215	0.85
Cytoplasmic	216	232	0.38
Transmembrane Helix	233	256	0.50
Non-Cytoplasmic	257	259	0.55
Transmembrane Helix	260	280	0.85
Cytoplasmic	281	287	0.87
Transmembrane Helix	288	309	0.92
Non-Cytoplasmic	310	318	0.78
Transmembrane Helix	319	338	0.94
Cytoplasmic	339	348	0.92
Transmembrane Helix	349	372	0.91
Non-Cytoplasmic	373	410	0.93
Transmembrane Helix	411	431	0.92
Cytoplasmic	432	438	0.89
Transmembrane Helix	439	456	0.86
Non-Cytoplasmic	457	459	0.46
Transmembrane Helix	460	482	0.73
Cytoplasmic	483	535	0.71
Transmembrane Helix	536	555	0.91
Non-Cytoplasmic	556	824	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPSAPESK HKSSLNSSPW SGLMALGNSR HGHHGPGAQS ASRAAAAPKP GPPAGLSGGL  60
   61 SQPAGWQSLL SFTILFLAWL AGFSSRLFAV IRFESIIHEF DPWFNYRSTH HLASHGFYEF 120
  121 LNWFDERAWY PLGRIVGGTV YPGLMITAGL IHWILNTLNI TVHIRDVCVF LAPTFSGLTS 180
  181 ISTFLLTREL WNQGAGLLAA CFIAIVPGYI SRSVAGSFDN EGIAIFALQF TYYLWVKSVK 240
  241 TGSVFWTMCC CLSYFYMVSA WGGYVFIINL IPLHVFVLLL MQRYSKRVYI AYSTFYIVGL 300
  301 ILSMQIPFVG FQPIRTSEHM AAAGVFALLQ AYAFLQYLRD RLTKQEFQTL FFLGVSLAAG 360
  361 AVFLSVIYLT YTGYIAPWSG RFYSLWDTGY AKIHIPIIAS VSEHQPTTWV SFFFDLHILV 420
  421 CTFPAGLWFC IKNINDERVF VALYAISAVY FAGVMVRLML TLTPVVCMLS AIAFSSVFEH 480
  481 YLGDDMKREN PPVEDSSDED DRRSPGNLYD KAGKVRKHVT EQEKPEEGLG PNIKSIVTML 540
  541 MLMLLMMFAV HCTWVTSNAY SSPSVVLASY NHDGTRNILD DFREAYFWLR QNTDEHARVM 600
  601 SWWDYGYQIA GMANRTTLVD NNTWNNSHIA LVGKAMSSNE TAAYKIMRSL DVDYVLVIFG 660
  661 GVIGYSGDDI NKFLWMVRIA EGEHPKDIRE GDYFTQQGEF RVDRAGSPTL LNCLMYKMSY 720
  721 YRFGEMQLDF RTPPGFDRTR NAEIGNKDIK FKHLEEAFTS EHWLVRIYKV KAPDNRETLG 780
  781 HKPRVTNIFP KQKYLSKKTT KRKRGYVKNK LVFKKGKKMS KKTV