YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NLTL2_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.76
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYATILMIF SVVALMSGER AHAAVDCSSL ILNMADCLSF VTSGSTVVKP EGTCCSGLKT  60
   61 VVRTGPECLC EAFKNSGSLG LTLDLSKAAS LPSVCKVAAP PSARCGLSVS GDPPATAPGL 120
  121 SPTAGAGAPA LSSGANAATP VSSPRSSDAS LLSVSFAFVI FMALISSFY

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	148	0.98
Transmembrane Helix	149	168	0.72
Cytoplasmic	169	169	0.69