YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PR1F4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNDEITTS SHASPAVNHE SISRAKQRIK DGLATRRSWR VMFDLHSTGL PHGVSDVFSR  60
   61 IKTNLAYFRS NYAIVILNVI FFSLIWHPTS LIVFTGLVFL WIFLYFLRDV PLKVFRFQID 120
  121 DRAVLIGLSV ITIVLLLLTN ATFNIVAALM AGAVLVLIHA VIRKTDDLFL DEEAATTETS 180
  181 GLTSHPSS

Type	Start	End	Confidence
Cytoplasmic	1	66	0.89
Transmembrane Helix	67	86	0.81
Non-Cytoplasmic	87	90	0.64
Transmembrane Helix	91	107	0.94
Cytoplasmic	108	122	0.69
Transmembrane Helix	123	139	0.88
Non-Cytoplasmic	140	142	0.50
Transmembrane Helix	143	162	0.76
Cytoplasmic	163	188	0.68