YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NB5R1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH  60
   61 NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY TPTTLDSDVG RFELVIKMYP 120
  121 QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT 180
  181 DKTKVHLIYA NVTYDDILLK EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ 240
  241 THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F

Type	Start	End	Confidence
Cytoplasmic	1	12	0.57
Transmembrane Helix	13	32	0.82
Non-Cytoplasmic	33	281	0.80