YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157820109, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.98
Transmembrane Helix	57	80	0.89
Non-Cytoplasmic	81	117	0.96
Transmembrane Helix	118	139	0.92
Cytoplasmic	140	147	0.86
Transmembrane Helix	148	167	0.95
Non-Cytoplasmic	168	175	0.80
Transmembrane Helix	176	197	0.93
Cytoplasmic	198	207	0.76
Transmembrane Helix	208	227	0.93
Non-Cytoplasmic	228	234	0.72
Transmembrane Helix	235	257	0.89
Cytoplasmic	258	343	0.97
Transmembrane Helix	344	363	0.89
Non-Cytoplasmic	364	399	0.88
Transmembrane Helix	400	418	0.91
Cytoplasmic	419	465	0.95
Transmembrane Helix	466	486	0.93
Non-Cytoplasmic	487	494	0.76
Transmembrane Helix	495	518	0.83
Cytoplasmic	519	525	0.73
Transmembrane Helix	526	549	0.83
Non-Cytoplasmic	550	556	0.82
Transmembrane Helix	557	580	0.89
Cytoplasmic	581	606	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFGIGILGL RRSGVWKRRG DTVLPRVSTA VGGKFVGDRV SATMAPTLKQ AYRRRWWMAC  60
   61 TAVVENLFFS AVLLGWASLL IMLKKEGFYS SLCPAENRTN TTQDEQQWIS CDQQEEMLNL 120
  121 GFTIGSFLLS ATTLPLGILM DRFGPRPLRL VGSACFAASC TLMALASRDT EVLSPLIFLA 180
  181 LSLNGFAGIC LTFTSLTLPN MFGNLRSTFM ALMIGSYASS AITFPGIKLI YDAGVSFMVI 240
  241 MFTWSGLACL IFLNCALNWP AEAFPAPEEV DYTKKIKLIG LALDHKVTGD RFYTHVTIVG 300
  301 QRLSQKTPSL EEGTDGFISS SDIPGTSEKT PEKSVPFRKS LCSPIFLWSL VTMGMTQLRV 360
  361 IFYMGAMNKI LEFLVTGGKE CETNEQRQKV EETVEFYSSI FGVMQLLCLL TCPLIGYIMD 420
  421 WRIKDCVDDP TEGTLNESAS FGDARDGTIT KFTKPRYRKI QKLTNAINAF TLTNILLVGF 480
  481 GITCLIKNLH LQLVAFVLHT VVRGFFHSAC GGLYAAVFPS NHFGTLTGLQ SLISAVFALL 540
  541 QQLLFMAMVG PLHGDPFWVN LGLLILSLLG FLLPSYLYYY RSRLEREYAT NLLDPQKVLN 600
  601 TSKVAT