YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL34_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIGKSPILL HHHVIFLLLL VLQVSGQHQP RTTAPPYIAQ RPNQVPAVII AMLMFTLLFS  60
   61 MLACCVCYKY TNTSPHGTSS DTEEGGHGEV AFTRRTSRGL GKDVINSFPS FLYSQVKGLK 120
  121 IGKGGVECAI CLNEFEDEET LRLMPPCSHA FHASCIDVWL SSRSTCPVCR ASLPPKPGSD 180
  181 QNSLYPFIRP HDNQDMDLEN VTARRSVLES PDVRLLDRLS WSNNTGANTP PRSRSTGLSN 240
  241 WRITELLFPR SHSTGHSLVP RVENLDRFTL QLPEEVRRQL SHMKTLPQAR SSREGYRSGS 300
  301 VGSERRGKGK EKEFGEGSFD RLKAEMV

Type	Start	End	Confidence
Signal Peptide	1	26	0.53
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	327	0.56