YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL15_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.26
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVMSRVSFY SSFLLLLLEV VVASSEFDDE GRTSFSPTTA IIMIVLVSVF FALGCISVYM  60
   61 RRCLQHALGM DSGGGPGNWL NVRQTTEPGL DASVIETFPT FPYSTVKTLR IGKEALECPV 120
  121 CLNEFEDDET LRLIPQCCHV FHPGCIDAWL RSQTTCPLCR ANLVPVPGES VSSEIPGLAR 180
  181 ETGQNSLRTP IDDNRKRVLT SPDERLIDSV AWTGNQSMPR KSMSTGWKLA ELYSPASSPG 240
  241 QPEENLDRYT LRLPQEIHDQ LVNSSLGKQG SKGQLALPQE RSSVRGFRTG SLGTEKNYFY 300
  301 FERFDQDGRL DRRPFSITPP YHTRSIQSPD EIINASGNYQ DRAGAPKGLL LAIRSPFDRL 360
  361 FTGKKNAGER SYLQSGDASP V

Type	Start	End	Confidence
Signal Peptide	1	23	0.51
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	38	0.81
Transmembrane Helix	39	60	0.70
Cytoplasmic	61	381	0.70