YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7486879, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLKKSRSEN SSVASSGSKI EEQTEKSAEP TTIKVQKKAG TPGRSIDVFA VQCEKCMKWR  60
   61 KIDTQDEYED IRSRVQEDPF FCKTKEGVSC EDVGDLNYDS SRTWVIDKPG LPRTPRGFKR 120
  121 SLILRKDYSK MDAYYITPTG KKLKSRNEIA AFIDANQDYK YALLGDFNFT VPKVMEETVP 180
  181 SGILSDRTPK PSRKFLSGKM QGGGGRDPFG GGFGGPFGGF GGGSFGGFGR GSFGGFGGPN 240
  241 GPPSLMSNFF GGRDPFDDPF FTQPFGGGMF QSNFFGPSMN PFAEMHRLPQ GFIENNQPPG 300
  301 PSRSRGPVIE EIDSDDEKEG EGDKEKKGSL GKHGRSSSEA ETEDARVRER RNRQMQSMNV 360
  361 NAERRNREMQ NMNVNAERRN PQMQNMNVNA MVNNGQWQPQ TGSYSFQSST VTYGGQNGNY 420
  421 YTSSKTRRTG SDGGHTVARK LNSDGRVDTT QTLHNLNEGG LVNREQPMLL PSTDPSPSHA 480
  481 RAESSRRPKA AMNLIPILAI AVASAAFLSE LVSMSLPESI WRMMTPKAKI SVFSVNFPVV 540
  541 TYSGAKYPIA ALVLSAEKTI SSARRL

Type	Start	End	Confidence
Cytoplasmic	1	208	0.75
Transmembrane Helix	209	229	0.62
Non-Cytoplasmic	230	259	0.79
Transmembrane Helix	260	279	0.55
Cytoplasmic	280	489	0.77
Transmembrane Helix	490	514	0.82
Non-Cytoplasmic	515	566	0.54